R 3.5.0 and spaces in file paths

The R 3.5.0 update introduced a bug, at least under MS-Windows. File paths containing spaces are truncated at the first space character, leading to errors like:


Fatal error: cannot open file 'C:\Users\<user-name>\AppData\Roaming\WinEdt': No such file or directory

for a file path like 'C:\\Users\\<user-name>\\AppData\\Roaming\\WinEdt Team\\WinEdt 10\\<file-name>' or 'C:/Users/<user-name>/AppData/Roaming/WinEdt Team/WinEdt 10/<file-name>'.

This bug breaks, among other things, the ‘RManager’ extension of the editor WinEdt. I would expect this to cause various other surprising errors after upgrading to R 3.5.0.

This bug is already corrected in the patched version of R 3.5.0 available through CRAN. For Windows, the most recent patched R version can be downloaded from https://cran.r-project.org/bin/windows/base/rpatched.html and installed as usual.

ooacquire 0.1.5

Improvements aiming at continuing the expansion of the support of different Ocean Optics spectrometers and of  additional calibration methods.

  • Support use of irradiance calibrations supplied by Ocean Optics
  • Add pre-built calibrations and methods for two Flame-S instruments.

Documentation website is at http://docs.r4photobiology.info/ooacquire/.

Please raise issues concerning bugs or enhancements to this package through Bitbucket at https://bitbucket.org/aphalo/ooacquire/issues

NOTE: This package is NOT available through CRAN.  In addition, this version of package ‘ooacquire’ depends on versions of packages ‘photobiology’, ‘photobiologyWavebands’, ‘ggspectra’, and ‘ggplot2’ not yet available through CRAN.

This version of the package is available through the r4photobiology repository  and through Bitbucket.

INSTALLATION:

  1. from the binary or source packages from the CRAN-compatible repository at http://r.r4photobiology.info/
  2. from sources retrieved from the Git repository at Bitbucket.

devtools::install_github("tidyverse/ggplot2")

devtools::install_bitbucket("aphalo/ooacquire", ref = "0.1.5")

devtools::install_bitbucket("aphalo/photobiology")  # only if not automatically installed/updated

devtools::install_bitbucket("aphalo/photobiologyWavebands")  # only if not automatically installed/updated

devtools::install_bitbucket("aphalo/ggspectra")  # only if not automatically installed/updated

ooacquire 0.1.4.9003

Fix “breaking” bug causing fatal errors after package ‘Rcpp’ was updated, and many non-breaking but important bugs.

Several improvements aiming at continuing the expanding the support to different Ocean Optics spectrometers, and to the documentation.

  •  Fix serious bug that triggered a fatal error with current version of ‘Rcpp’.
  • Add functions choose_sr_interactive() and choose_ch_interactive() and revise acq_irrad_interactive() and acq_fraction_interactive() to make use of them.
  •  Add fields to the instrument descriptor to store the numeric coefficients in addition to functions for non-linearity and wavelength calibrations.
  • Add pre-built calibrations and methods for our Jaz instrument.
  • Update and expand the vignettes and examples.

This version of the package is available through the r4photobiology repository  and through Bitbucket.

Please raise issues concerning bugs or enhancements to this package through Bitbucket at https://bitbucket.org/aphalo/ooacquire/issues