As our package ‘photobiologyInOut’ (versions >= 0.4.15) supports the automatic import of the files returned by the Quick TUV Calculator, we show here how to produce such files, and link to an example showing how to import and plot them in R.
The changes from version 0.3.0, the current CRAN release, are:
plot() and autoplot() methods for classes source_spct and response_spct which prevented plotting of spectra with the time.unit attribute set to any value different from "second".Documentation web site at http://docs.r4photobiology.info/ggspectra/.
NOTE: The updated package has been submitted to CRAN.
Please raise issues concerning bugs or enhancements to this package through Bitbucket at https://bitbucket.org/aphalo/ggspectra/issues
Occasional R crashes when stat_label_peaks() and stat_label_valleys() are used together with ggrepel::geom_label_repel(). This is a bug in ‘ggrepel’ (= 0.8.0) at least under Windows with long vectors of labels. The bug affects these stats and the "label.peaks" and "label.valleys" annotations in all plot() methods. The bug has been reported and the author is working on a fix.
Revise to track changes in ‘photobiology’ version 0.9.24 and ‘ggplot2’ 3.0.0, which are now required.
The changes from version 0.2.4, the current CRAN release, are:
Code breaking change!
Change the names of some the values calculated by the stats defined in ‘ggspectra’ to avoid confusion with the names of ‘ggplot2’ aesthetics. (This breaks old code only if any of the renamed variables has been manually mapped using aes(), which is rather unlikely.)
Other non-code breaking changes
stat_label_peaks() and stat_label_valleys() now have a new parameter, label.fill which can be used to set the content of ..x.label.. and ..y.label.. for labels not labelled as peaks or valleys. The earlier default of "" is maintained.stat_find_wls() and stat_find_qtys(), two new statistics useful for highlighting features in spectra.ylim to all plot() methods. By default previous behaviour is preserved.plot() methods to support objects with multiple spectra in long form.plot() methods to NOT display by default calculated numerical summaries in annotations when a plot contains multiple spectra.plot() methods to retrieve and validate the name of the factor used to identify multiple spectra, using as default the value stored in the attribute "idfactor" implemented in ‘photobiology’ 0.9.21 and later.autoplot() as an alias of plot() for spectra and collections of spectra.Documentation web site at http://docs.r4photobiology.info/ggspectra/.
NOTE: The updated package has been submitted to CRAN.
Please raise issues concerning bugs or enhancements to this package through Bitbucket at https://bitbucket.org/aphalo/ggspectra/issues
The main changes from version 0.4.16 the previous CRAN release, are:
read_oo_jazpc() to read transmittance (%) and reflectance (%) from processed data output by Ocean Optics’ Jaz modular spectrometer.POSIXct objects under R (=3.4.4) triggering errors in downstream code. (Possible underlying problem: class of returned values from some functions from package ‘lubridate’ seems to depend on the R version.)Documentation web site at http://docs.r4photobiology.info/photobiologyinout/.
NOTE: This version of the package is in CRAN.
Please raise issues concerning bugs or enhancements to this package through Bitbucket at https://bitbucket.org/aphalo/photobiologyinout/issues