ooacquire 0.1.5

Improvements aiming at continuing the expansion of the support of different Ocean Optics spectrometers and of  additional calibration methods.

  • Support use of irradiance calibrations supplied by Ocean Optics
  • Add pre-built calibrations and methods for two Flame-S instruments.

Documentation website is at http://docs.r4photobiology.info/ooacquire/.

Please raise issues concerning bugs or enhancements to this package through Bitbucket at https://bitbucket.org/aphalo/ooacquire/issues

NOTE: This package is NOT available through CRAN.  In addition, this version of package ‘ooacquire’ depends on versions of packages ‘photobiology’, ‘photobiologyWavebands’, ‘ggspectra’, and ‘ggplot2’ not yet available through CRAN.

This version of the package is available through the r4photobiology repository  and through Bitbucket.

INSTALLATION:

  1. from the binary or source packages from the CRAN-compatible repository at http://r.r4photobiology.info/
  2. from sources retrieved from the Git repository at Bitbucket.

devtools::install_github("tidyverse/ggplot2")

devtools::install_bitbucket("aphalo/ooacquire", ref = "0.1.5")

devtools::install_bitbucket("aphalo/photobiology")  # only if not automatically installed/updated

devtools::install_bitbucket("aphalo/photobiologyWavebands")  # only if not automatically installed/updated

devtools::install_bitbucket("aphalo/ggspectra")  # only if not automatically installed/updated

ggpmisc 0.2.16.9002 (test release)

This is an incremental update meanwhile waiting for the release of ‘ggplot2’ 2.2.2. The differences compared to ‘ggpmisc’ 0.2.16.9001 are:

  • geom_table() is now more consistent with the expectations of the grammar of graphics as starting from the current version it produces multiple tables per call when a list of data frames or tibbles is mapped to the label aesthetic.
  • A new statistic stat_quadrat_counts() counts the number of observations in each quadrat of a plot.  An obvious use is in volcano and quadrat plots built using geom_point().

Both geom_table() and stat_quadrat_counts() are still under development and some details of the user interface may still change.

Note: ‘ggplot2’ >= 2.2.1.9000 (>= commit of 2017-02-09) is required.

Documentation website is at http://docs.r4photobiology.info/ggpmisc/.

Please raise issues concerning bugs or enhancements to this package through Bitbucket at https://bitbucket.org/aphalo/ggpmisc/issues

NOTE: This version of the package is NOT available from CRAN

INSTALLATION:

  1. from the binary or source packages from the CRAN-compatible repository at http://r.r4photobiology.info/
  2. from sources retrieved from the Git repository at Bitbucket.

devtools::install_github("tidyverse/ggplot2")
devtools::install_bitbucket("aphalo/ggpmisc", ref = "0.2.16.9002")

ggpmisc 0.2.16.9001 (test release)

The binary for ‘ggpmisc’ 0.2.16.9000 was missing the vignettes. I have corrected this, and made a few edits to vignettes and documentation. I also added a Remotes: section to DESCRIPTION which when installing through ‘devtools’ should update ‘ggplot2’ automatically.

Note: ‘ggplot2’ >= 2.2.1.9000 (>= commit of 2017-02-09) is required.

Documentation website is at http://docs.r4photobiology.info/ggpmisc/.

Please raise issues concerning bugs or enhancements to this package through Bitbucket at https://bitbucket.org/aphalo/ggpmisc/issues

NOTE: This version of the package is NOT available from CRAN

INSTALLATION:

  1. from the binary or source packages from the CRAN-compatible repository at http://r.r4photobiology.info/
  2. from sources retrieved from the Git repository at Bitbucket.

devtools::install_github("tidyverse/ggplot2")
devtools::install_bitbucket("aphalo/ggpmisc", ref = "0.2.16.9001")